MmuEX0015122 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65664506-65673036:-
Coord C1 exon
chr11:65672909-65673036
Coord A exon
chr11:65668689-65668916
Coord C2 exon
chr11:65664506-65664697
Length
228 bp
Sequences
Splice sites
3' ss Seq
GGGTCTTCCCTTCCCAACAGAAC
3' ss Score
10.36
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAAAGAAACTTGGATATACATTCAACAATCGGAACTTCCACAACGTGTCCCTAGGGCAAGGACAAGAGGTAGTTGCTGAGGCTGCACTGGACTTGGCTGCTAAGAAGGGTCACTGGGTGATTCTGCAG
Seq A exon
AACATCCACCTGGTGGCCAAGTGGCTCAGTACCCTGGAGAAGAAACTGGAGGAGCTCAGCGAGGAAAGTCACCCAGACTTCAGGGTCTTCATCAGCGCAGAGCCTGCACCCTCCCCTGAGGGCCACATCATTCCCCAGGGCATTCTGGAAAACTCCATTAAGATCACCAATGAGCCTCCCACAGGCATGCACGCCAACTTACACAAAGCCCTGGACAACTTCACTCAG
Seq C2 exon
GACACTCTGGAGATGTGTTCCCGGGAGACAGAGTTCAAGACCATCCTCTTTGCTTTGTGCTACTTTCATGCGGTGGTTGCCGAGAGACGGAAGTTTGGGCCACAGGGCTGGAATCGGTCCTATCCATTTAACACTGGGGACCTCACCATCTCTGTGAATGTGCTATATAATTTCCTGGAGGCTAACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(23.9=100),PF0302810=Dynein_heavy=PU(0.1=0.0)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=PD(1.1=3.1),PF0302810=Dynein_heavy=PU(14.2=98.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAACTTCCACAACGTGTC
R:
CTTTGTGTTAGCCTCCAGGAA
Band lengths:
292-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: