GgaEX1020257 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1155760-1175232:+
Coord C1 exon
chr18:1155760-1155887
Coord A exon
chr18:1171436-1171663
Coord C2 exon
chr18:1175041-1175232
Length
228 bp
Sequences
Splice sites
3' ss Seq
GTCCTCTTTGTCCCTACTAGAAC
3' ss Score
8.21
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGAAAAAACTCGGGTACACATTTAACAACAGGAATTTCCACAACGTGTCCCTGGGACAAGGCCAGGAGGTGGTCGCTGAGCAAGCTCTGGATGTGGCTGCAGCAGAGGGGCACTGGGTCATCCTGCAG
Seq A exon
AACATCCATCTGGTGGCCAAGTGGCTGAGCTCTCTGGAGAAGAAGCTGGAGCAGCACAGTGAGGGCAGCCATCGGGATTTCCGTGTCTTCATTAGCGCAGAGCCAGCTCCGTGCCCAGAGAGCCACATCATTCCGCAGGGCATCCTGGAGAGCTCCATCAAAATCACCAACGAGCCACCGACCGGGATGCACGCCAACTTGCACAAAGCCCTCGACAACTTCAACCAG
Seq C2 exon
GATACCCTGGAGATGTGCACTCGGGAGAACGAGTTCAAGAGCATCCTGTTTGCCCTCTGCTATTTCCATGCTGTGGTGGCAGAAAGGCGCAAGTTTGGTCCCCAGGGCTGGAACCGATCCTACCCCTTCAACACTGGAGACCTCACTATCTCTGTTAACGTGCTCTATAACTACCTAGAGGCCAGCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'75-75,'75-74,76-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(10.6=100)
C2:
PF0302810=Dynein_heavy=FE(8.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGGAATTTCCACAACGTGT
R:
TGAGCTGGCCTCTAGGTAGTT
Band lengths:
292-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]