BtaEX6087237 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31223662-31228920:+
Coord C1 exon
chr19:31223662-31223789
Coord A exon
chr19:31226581-31226808
Coord C2 exon
chr19:31228729-31228920
Length
228 bp
Sequences
Splice sites
3' ss Seq
GGCTCCTTCCTTCCCACCAGAAT
3' ss Score
8.83
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCAAAAAACTCGGATATACCTTCAACAACCGGAACTTCCACAACGTGTCTTTGGGGCAAGGACAGGAGGTTGTGGCTGAGGCTGTGCTGGACCTGGCTGCCAAGAAAGGCCACTGGGTTATTTTGCAG
Seq A exon
AATATCCACCTGGTGGCCAAGTGGCTTGGCGCCCTGGAGAAGAAGCTGGAGGAGCATAGTGAGAACAGCCACGCAGAGTTCAGGGTCTTCATGAGCGCGGAGCCCGCACCCTCCCCTGGGAGCCACATCATCCCCCAAGGCCTCCTGGAAAATGCCATCAAGATCACCAGCGAGCCACCCACGGGCATGCACGCCAACCTGCACAAGGCCCTGGACAACTTCACTCAG
Seq C2 exon
GACACCCTGGAGATGTGTTCCCGGGAGACGGAGTTTAAGAGCATCCTCTTTGCGCTTTGTTACTTTCACGCTGTGGTGGCAGAAAGACGGAAGTTTGGGCCCCAGGGGTGGAATCGCTCCTACCCCTTCAACACCGGGGACCTCACCATCTCTGTGAACGTACTCTACAACTTCCTGGAGGCCAACCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'86-96,'86-95,87-96=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.066 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(8.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAACAACCGGAACTTCCA
R:
TGGCCTCCAGGAAGTTGTAGA
Band lengths:
294-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]