HsaEX6021116 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11827131-11835522:+
Coord C1 exon
chr17:11827131-11827258
Coord A exon
chr17:11833183-11833410
Coord C2 exon
chr17:11835331-11835522
Length
228 bp
Sequences
Splice sites
3' ss Seq
GGCTCCTTCCTTCCCACTAGAAC
3' ss Score
8.71
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GAAGAAAACTTGGATACACCTTCAACAATCAGAACTTTCACAACGTGTCTTTGGGGCAAGGACAGGAAGTGGTGGCTGAGGCTGCGCTGGACCTCGCTGCCAAGAAAGGTCACTGGGTTATTTTGCAG
Seq A exon
AACATTCACCTGGTGGCCAAGTGGCTCAGCACCCTGGAGAAGAAGCTGGAGGAGCACAGTGAGAACAGCCACCCAGAGTTCAGGGTCTTCATGAGTGCAGAGCCAGCACCCTCCCCTGAGGGCCACATCATCCCCCAGGGCATCCTGGAGAACTCCATTAAGATCACCAATGAGCCCCCCACGGGCATGCATGCCAACCTGCACAAGGCCCTGGACAACTTCACTCAG
Seq C2 exon
GACACTCTGGAGATGTGTTCTCGGGAGACGGAGTTTAAGAGCATCCTCTTTGCTCTTTGTTACTTCCATGCGGTGGTGGCAGAAAGACGAAAATTTGGGCCCCAGGGATGGAATCGCTCATACCCCTTTAACACTGGAGACCTCACTATCTCTGTGAATGTCCTCTACAACTTCCTGGAGGCCAACGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'62-64,'62-63,63-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(23.3=100),PF0302810=Dynein_heavy=PU(0.1=0.0)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=PD(0.6=1.6),PF0302810=Dynein_heavy=FE(14.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACACCTTCAACAATCAGA
R:
TGGCCTCCAGGAAGTTGTAGA
Band lengths:
302-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)