GgaEX1020257 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1171743-1190113:+
Coord C1 exon
chr18:1171743-1171870
Coord A exon
chr18:1186317-1186544
Coord C2 exon
chr18:1189922-1190113
Length
228 bp
Sequences
Splice sites
3' ss Seq
GTCCTCTTTGTCCCTACTAGAAC
3' ss Score
8.21
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGAAAAAACTCGGGTACACATTTAACAACAGGAATTTCCACAACGTGTCCCTGGGACAAGGCCAGGAGGTGGTCGCTGAGCAAGCTCTGGATGTGGCTGCAGCAGAGGGGCACTGGGTCATCCTGCAG
Seq A exon
AACATCCATCTGGTGGCCAAGTGGCTGAGCTCTCTGGAGAAGAAGCTGGAGCAGCACAGTGAGGGCAGCCATCGGGATTTCCGTGTCTTCATTAGCGCAGAGCCAGCTCCGTGCCCAGAGAGCCACATCATTCCGCAGGGCATCCTGGAGAGCTCCATCAAAATCACCAACGAGCCACCGACCGGGATGCACGCCAACTTGCACAAAGCCCTCGACAACTTCAACCAG
Seq C2 exon
GATACCCTGGAGATGTGCACTCGGGAGAACGAGTTCAAGAGCATCCTGTTTGCCCTCTGCTATTTCCATGCTGTGGTGGCAGAAAGGCGCAAGTTTGGTCCCCAGGGCTGGAACCGATCCTACCCCTTCAACACTGGAGACCTCACTATCTCTGTTAACGTGCTCTATAACTACCTAGAGGCCAGCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'59-66,'59-65,60-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGGAATTTCCACAACGTGT
R:
TGAGCTGGCCTCTAGGTAGTT
Band lengths:
292-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]