RnoEX0028671 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52367333-52371309:-
Coord C1 exon
chr10:52371082-52371309
Coord A exon
chr10:52370064-52370214
Coord C2 exon
chr10:52367333-52367524
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTCGATATGTATGTTCTCAGGAA
3' ss Score
6.35
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
AACATCCACCTGGTGGCCAAATGGCTCAGTACCCTGGAGAAGAAACTGGAGGAGCTCAGCGAGGAAAGTCACCCAGACTTCAGGGTCTTCATCAGCGCCGAGCCTGCACCCTCCCCTGAGGGCCACATCATTCCCCAGGGCATTCTGGAAAACTCCATTAAGATCACCAACGAGCCCCCCACAGGCATGCATGCCAACTTACACAAAGCCCTGGACAATTTCACTCAG
Seq A exon
GAAGCTATCATTTCTCAGCTTTTCTCCATGGGAAAGGGAAATACAGGAAGGTAGGACCTACGGCCCATCTTGAAACCCCAGTGAGCTTTATTCGTACTTATGGAGAAGCTTCTAGGAGCTGTCAGAAGGGTCTTCCTCTCTGCTGTCAACC
Seq C2 exon
GACACTCTGGAGATGTGCTCCCGGGAGACAGAGTTCAAGACCATCCTCTTTGCTTTGTGTTACTTTCATGCCGTGGTTGCCGAAAGACGCAAGTTTGGGCCGCAGGGATGGAATCGTTCCTACCCCTTTAACACTGGGGACCTCACCATCTCTGTGAATGTGCTGTACAATTTCCTGGAGGCTAACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX3-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
PF0302810=Dynein_heavy=PD(2.3=33.3)
C2:
PF0302810=Dynein_heavy=FE(12.2=100)
Main Inclusion Isoform:
ENSRNOT00000005583fB4274
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCAGTACCCTGGAGAAG
R:
TTGAACTCTGTCTCCCGGGAG
Band lengths:
245-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]