RnoALTA0023852-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025415 | Mettl11b
Description
methyltransferase like 11B [Source:RGD Symbol;Acc:1564106]
Coordinates
chr13:81990696-81997367:-
Coord C1 exon
chr13:81997192-81997367
Coord A exon
chr13:81990857-81990945
Coord C2 exon
chr13:81990696-81990856
Length
89 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACAAGATATCTTTTCTGCAGGGG
3' ss Score
6.52
Exon sequences
Seq C1 exon
TAAAATTGTATGCTTTAACAAGCCAAGTCATTGATGGCGAGATGCAGTTCTATGCCAGAGCCAAACTTTTCTACCAAGAAGTACCAGCCACAGAAGAAGGCATGATGGGAAATTTTATTGAACTATCCAACCCAGATATCCAGGCCTCTCGTGAATTTCTTAGGAAGTTTGTTGGG
Seq A exon
GGGCCGGGGAGAGCGGGAACTGGCTGCGCCTTGGACTGCGGTTCTGGAATAGGAAGGGTCAGCAAGCACGTCTTGTTGCCTGTTTTCAG
Seq C2 exon
CAGTGTCGAGCTAGTGGACATGATGGAATCCTTCCTCCTCGAAGCCCAGAGCTACTTGCAGGTTAACGAGAACAAAGTTGAAAGTTACCACTGCTACAGCCTGCAGGAGTTCACGCCCCACTTGGGGAGATATGACGTCATCTGGATTCAGTGGGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025415-2-4,2-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF052916=Bystin=FE(53.7=100),PF058917=Methyltransf_PK=PU(68.7=78.0)
A:
NA
C2:
PF058917=Methyltransf_PK=FE(46.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTCTATGCCAGAGCCAA
R:
GGGCTTCGAGGAGGAAGGATT
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]