RnoEX0053966 @ rn6
Exon Skipping
Gene
ENSRNOG00000025415 | Mettl11b
Description
methyltransferase like 11B [Source:RGD Symbol;Acc:1564106]
Coordinates
chr13:81990696-82006005:-
Coord C1 exon
chr13:82005588-82006005
Coord A exon
chr13:81997192-81997367
Coord C2 exon
chr13:81990696-81990945
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGATAATATTTTCTTCGCAGTAA
3' ss Score
6.11
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CCATGTTTGCTTTTAGCACCTGCTGGCTTGGAGTGGTGTCGCGCACGCAATCAGACGGTGGGTGGATGTGCCAAGAGCCTGACCTCCCCACGTCTGCTACCCCTCCCCCTTACAACGCATGACAGCCTGTCCTGATATAGATGGGACCTGGGACTGGTTTAAAATGACAGGCTCAAGTTCTTTGAGGAAGAGAAGACTAATTCAAAGGAGCAGCCAGACAAGCTTCCGTTCTCTGCAGGAATAATTACTATTCCCCACTTCACCATGGCCCACCTGGGAGCCCATTTTGCCTTTAGATCCCGCTGGCAGAAGACCGACGATGAACTCTGTCGTCATAGCATGTCTTTTATCCTTCACAAAGCCATTCGCAATGACTTCTTTCAGAGCTACCTCTACCTGCTGGAAAAAATTCCCCTGG
Seq A exon
TAAAATTGTATGCTTTAACAAGCCAAGTCATTGATGGCGAGATGCAGTTCTATGCCAGAGCCAAACTTTTCTACCAAGAAGTACCAGCCACAGAAGAAGGCATGATGGGAAATTTTATTGAACTATCCAACCCAGATATCCAGGCCTCTCGTGAATTTCTTAGGAAGTTTGTTGGG
Seq C2 exon
GGGCCGGGGAGAGCGGGAACTGGCTGCGCCTTGGACTGCGGTTCTGGAATAGGAAGGGTCAGCAAGCACGTCTTGTTGCCTGTTTTCAGCAGTGTCGAGCTAGTGGACATGATGGAATCCTTCCTCCTCGAAGCCCAGAGCTACTTGCAGGTTAACGAGAACAAAGTTGAAAGTTACCACTGCTACAGCCTGCAGGAGTTCACGCCCCACTTGGGGAGATATGACGTCATCTGGATTCAGTGGGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025415_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(6.1=33.3)
A:
PF052916=Bystin=FE(53.7=100),PF058917=Methyltransf_PK=PU(68.7=78.0)
C2:
PF058917=Methyltransf_PK=FE(46.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCTTCCGTTCTCTGCAG
R:
ATTCCAGAACCGCAGTCCAAG
Band lengths:
251-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]