RnoALTA0027998-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107245820-107248520:+
Coord C1 exon
chr6:107245820-107246372
Coord A exon
chr6:107248455-107248458
Coord C2 exon
chr6:107248459-107248520
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACCAGTGGCTTCTCCTGCAGACA
3' ss Score
7.77
Exon sequences
Seq C1 exon
ACACACATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGGATGCGAAGTGATTGTGGCCAAAGTATAGAACCCAGAAGGTGGTTGGACACCCAGGTGTGTCGGTGTGAGATCGGTGTAGTGAGGAGGGGTTTTGGCAAAGATCTCGAGGGCTTGGGGTAGCGGAAGTGGGACTGAAAAGGTGGCTGGCTCAGACCCAAGACCCAGAGCCCACAGATTTAAGAACAAGCAAAGCCTTGGCAGGAACCCAATAAGGAGGAGACCTGGGGCAATGCTGGGCACCCGGGGCCTCTCGGTGGGGGCACTGTGCTCCTTCAGGGATTGGAGGTGGGTGTCAGCAGACTGGGTGGGGGAAAATGGGGCGGGGAGGAAACAAGCTGGCCGCGGGGAAAGAAAGTCCAACCTCTCCTGGCTTTCGTCGGTCCCGGCAAGTTTGACCCAGGCTAGGCACCGATAAGCCGGCTCCCGGGGCTTCGTGAGGCAG
Seq A exon
ACAG
Seq C2 exon
AGATGCAGCTGCTCCTTCTCCTGTCCCTCCTGCTGCTGCTGGCCTCCACGCCAGGGTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448-2-2,2-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTTTGACCCAGGCTAGG
R:
CAGCAGGAGGGACAGGAGAAG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]