RnoINT0107080 @ rn6
Intron Retention
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107245820-107248520:+
Coord C1 exon
chr6:107245820-107246372
Coord A exon
chr6:107246373-107248454
Coord C2 exon
chr6:107248455-107248520
Length
2082 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACCAGTGGCTTCTCCTGCAGACA
3' ss Score
7.77
Exon sequences
Seq C1 exon
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGGATGCGAAGTGATTGTGGCCAAAGTATAGAACCCAGAAGGTGGTTGGACACCCAGGTGTGTCGGTGTGAGATCGGTGTAGTGAGGAGGGGTTTTGGCAAAGATCTCGAGGGCTTGGGGTAGCGGAAGTGGGACTGAAAAGGTGGCTGGCTCAGACCCAAGACCCAGAGCCCACAGATTTAAGAACAAGCAAAGCCTTGGCAGGAACCCAATAAGGAGGAGACCTGGGGCAATGCTGGGCACCCGGGGCCTCTCGGTGGGGGCACTGTGCTCCTTCAGGGATTGGAGGTGGGTGTCAGCAGACTGGGTGGGGGAAAATGGGGCGGGGAGGAAACAAGCTGGCCGCGGGGAAAGAAAGTCCAACCTCTCCTGGCTTTCGTCGGTCCCGGCAAGTTTGACCCAGGCTAGGCACCGATAAGCCGGCTCCCGGGGCTTCGTGAGGCAG
Seq A exon
GTAAGAAGGCAAACGGGCGTCTTGGGCAGGGCACGCCCCGGGGAATCTGTAGGCATCTGCCCCGTCTGGCTCGGGTAGGTAGTGGTGATGTGGGAGTGAGAGACCCCGGGAGATCGGCTGTGCGGTGGCTGTGTGAGCATTGAGGAGGGTCTCCGCTCCGCATCTGGAGCCCGGGGTGGGGGTTGGCCGGTAATCAGATTCCCCACAATCCGGCTGCACTTCTGGACCCGCATTCCCCGCCTCCCCTGTGCACTGCCGGGGTGAAGCCTCCAGACCCAGCGAACCTCCTGGGGATGTTCCGGCCACAGCCAGAACCTGCCAGACACCCAGGGTCCCCTGGGAACTGCCCCTCACATGGCGCCGCTCTAGGACAGGAACACGAGGTTTGGAAGAGTCTTCCAGACTCGGGTGGCCTTGAGTTGAAAGAAGTCATACTTTCCAGACTGTGGAATCGCAGGCTCTCGGTCGCAGGCCTGGGCAGCACCTGCAGCACTGGGTGGAGTTCTTCAGTCTCCCTCTGGTCAAGCTCACCATCCAGGCTAGTCCAAACCCGGAAACCTCGCCCACCTCCCAGCCCTGTCATCAGTCAGTTCTTGATCGCTGCTGCCCCCAGCATCCCCACAGCCCCTAAAGTGTGCACTAGACCCCCCCTTCCAACCTCCTCCCCAGGAGTCTGTGGTAAGAATGACTGAATGACTTGCCCTTTGTAGCAAATTAACCAGGGTTTACATCCATATATATGCTGAGGTAACTTTTGCTGAACGTGGCTTTTGAACGCTGCATTTCGTGCCTATAAAATGACTGCAAGTTGTTCTATGGTGAAAGAATTCAGAACATCAGTAGAATTACAGATTTTAATATTAACATACCTGTCGGCGCTTGTTTAATGTTCTGTACTGAACTGCACAGTGCTTACGTGTCTCTGACACAGAAACATGTGCACACATGCGAGCACACCCCGCACTACACATACACCTATTGTACGCATGCTCACAAGACTCCCATGACTGCACGTGTGCACACAACTCTGGGTTCAAGGGTGCGTACTCTCCTTAGCAAGACTGAAGGAAGTGTTCCTGTACAGGCAAGTGTTGGCTTTTGTTTGGTTTTAAAAAAGGAAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACGAGAACATGGATGGGTGCTAGGGATCCAAGCCAGGGTCTCAGCATAGTTAAACATGAACTGTACCTCAAGACTTGCACTTTTTGCCCAGACTGGCCTTGAACTCATGGCTCTGGTGGTATTCTAGGGGATGGTGATATTCTAGGGGATACTCAGCATCCAGTAGCTGGGACTCTTTGTGGGAGTGGGGGTGGGGTGGTGGGGGGCTGGGAAGATGGCTCCATCAGTGAACTGCTTGCTGTGCAAACATTCAGACCTGCAGCATGCTCTGTAACACCAGCCCTGGGTGGGAGGAGAGAGGAGGTGGGTCCCTCTCACCTATTGGCCAGCCAGCCTAGTAGAAAAAGCTGAACTACAGGTTCAAAGACAGACACTGTCTCAAAACATAAGGTGAGCAGAGCAGCTGAGGAAGACACCCATGCACGCGTGCGCGCGCGCGCACACACACACACACACACACGCACACACACGCACACACGCTCACTTTGGCTAATGAAAACTGACTGCAAATCTATTTTTATTAGCTGTCTTTAAGGGGGATGAAATGTCCTTTTAAGCTCTTACTGAGCTGAATGTTCTGGTTACTTTGATTCCAAACTCCGTTCTGTAACAGCCCAGAGGATTTTCAGTCACCCTGCTCCCCTCTGGGACTCCCACACAAATTGTTCCTGAGCTTCTGCCTGCTGTCAAACAGGCCTCTTCCTCCTGAGTTGCATGGCCTGTAGTTTAGAGACCACTGTTGTGCTCTCACAAGCCCAGTGGGTTTCCATGAGAAGAACATGCTACTCACATAGCAAGAGCCACCACTTTGGGTAGTTGTGGTGTCCCCTCTGGCTCTAACCAGTGGCTTCTCCTGCAG
Seq C2 exon
ACAGAGATGCAGCTGCTCCTTCTCCTGTCCCTCCTGCTGCTGCTGGCCTCCACGCCAGGGTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448:ENSRNOT00000012757:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]