HsaINT0120105 @ hg19
Intron Retention
Gene
ENSG00000100767 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:19262]
Coordinates
chr14:73704205-73706540:+
Coord C1 exon
chr14:73704205-73704300
Coord A exon
chr14:73704301-73706480
Coord C2 exon
chr14:73706481-73706540
Length
2180 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
ACCCAATGCGTCTCCCGCAGGCT
3' ss Score
8.61
Exon sequences
Seq C1 exon
GCGTTCCTTGCGGCCCGGCCGACCTCGCGGGCTTGGGCCTGGGCGGGCACCGACGGAGCGGCCCTGGCTGCAGCCTCCCGGCGCCAGCGAAGACAG
Seq A exon
GTAGGGAGGCGGAGGGACTGGAAGCCCCCGGGCGCCCAGCGGCGGGGACCCCGCACCCCGGGGCTTCTGCAGGAATTTGCTCGCCTGGCTCACGGCGACGGGGGTGTCGGAGAAAGTGGGGGCCGCAGAGAAGACCCCGCCCCGGCTCGCTCTCCGGAGGTGGGCGCAGGGTCATCGCTCGGCACCGCGCGCCCCCCGGCCTGGAGGAAAGGAAATGCAGAGAGCCGGGGAGCTGGTGCGGGACGGCCCCGGCGCGCACCCTCCGCCCGCTCGGACCTTCCCTTCAGGCGAATGCCGCTCCCGGCGCGTGGTACAAGCGAGGCCCTGGAGACCGTGCGCCCCTCCCGGGAGGTGCCACTGGGCCGCGGGCCTGGAGCGTCCGGGAGCCCCAGCGGCTGCCGGCACCTGCGCGGCCACCCCGGGCCTCCCGTGGGAACCGCGCCTCTCCGCCTCGGGGGTGCGCGGCGCGTTCCTGGGGTGGGGACGCGGGGTGCCTGGTCAGGGCTGGACCGATGCAGAGGGGGGCCGTGGGCGGGGGCCACGGGGACGGGCGTCTGCGGACTGCGGCGGTCCCGGAGTCGGCTGGGGACCCTGTAGGGGGAGGCTTGGTCGGCGGCCACCCGCCTTCCCGCCCTCTGGCGCCTAGGGTCGCCGCCTTCGGCCCTAGCTCAAGGCAGACGCGTTCCCCGGGAACAACACGTTGAGGGCGCCCACCCTGCGTGCCCGGGGCCACCCGGTCCCTGCCCTCGGGCGGCAGGAGAGGTCGAGCTTCCACGGCCCTCGGAGTAGCCCCGTGACCAGACCCGGACTGGCCTTGGAGTTGAAGGGGTTGTTTGCCACCAAATGAACCGAAAAAACTGAACTTTTCAGACTTCGGAATGGCAGATATGGGCTTGGAGTTCAGTGAAATTGCAGCGGAGGCGGTGGTGTTCTGAGTAATTACAAGTAAAATTCTTCTTTCACCCGTCTTTTCCTCAGCCTCGCCCGCCCTAGCAGGCCTAGCCTGGCCCTAGCAGGGGGCTCCTGCTCTGGGAGCTGCCCCCAGCAGAGCAGAGGCAGGGCTCTGGCAGCAACCCCCTTCCCTCACCCTCCAACCCCAGGAATCTCGAACTTGACCACGAAAATAATGACTCAATGACTCACTGTGCCAAATTAACGAGTGTGTACATTGTTCAGTATGCCAGGTTACATTTCTGCTGAGCTTGGCTTCTGTATGCTGTCTTTTATCCTTGTAAGCAGAAGTCATTTTATATCTTTAAAAAATTAGAACATTGGTAGAATTACAGATTTTAAAGTTCAAACCTGCACGCTAGTACTTGTTTAATGTTTTGTACTGAAGGGCGCACATTGTTTATGTCATTCTGCGATACAGCGACATGTATGTACACATACACACTGCACAGCGTGTATACCGACTGGACACCTGCACCAAATAGTACACACCAGACTGCACATGGACCCGCCCCGCACACTGCACATGCACTTTGCATGCATGCACACATCAAACCACAGACACTCCACACACACTGCACTGCACACTGCCCTGAGCACACTACACTGTACTGCACACTGCACTGCACTTTCAGGGCTCACACGCTGCACCACGCACACTGCACGGCGCACACTGCACTGCATACACACGTTGGTTATGGAGGCTGCTTATGGAGCTTCCCTGTGCAGAGAAATGCTGGCTTGGGTTTTAAATGGGCTACAATTAACACTTTTAGAGCATTTGGGTTTTCAAAGTGTCTTCAGAGACTTGATTTTTTTAAAGCCTATATTAGGAGTTTTTAAACATCTGATGTAATAGCTTTTTTAAAAGGAATCTTGCTGAATTAAAAGTGAGTCTAATTACTCGGATTCTGAACTTGTTTTTCAACCACATAGAAGTATTTTTAATTGCTCTCTCTTTTTTTCCCCTCTGGAACTCTGAAACAAGTTGTTCTTGAACTTCTGCCAGTTGCGGATGGGCCATTCCTTTCTTGCTCACATGTTGAGCCGCCCGGCGGGGCGCCCTCACGCTGTGTTCTCTGCGGTGCACCGAGGCGCACCCGGCTGTCCTGTTGCGGGTCTCCTGGTCACCTGTGGGCCATAGGGAGAGACGCGCCCACACACTCTCGCCCGCGCCCAGGACAGCTGCGGGAGCCCCGGGCCGCTCTAACCCAATGCGTCTCCCGCAG
Seq C2 exon
GCTGAGATGCGGCTGCTCCTGCTCGTGCCGCTGCTGCTGGCTCCAGCGCCCGGGTCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100767-PAPLN:NM_173462:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.104
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)