MmuINT0115063 @ mm9
Intron Retention
Gene
ENSMUSG00000021223 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:MGI Symbol;Acc:MGI:2386139]
Coordinates
chr12:85104591-85107164:+
Coord C1 exon
chr12:85104591-85104666
Coord A exon
chr12:85104667-85107101
Coord C2 exon
chr12:85107102-85107164
Length
2435 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACCAGTGGCTTCTCCTGCAGGCA
3' ss Score
8.05
Exon sequences
Seq C1 exon
GTAGTCGGTGCTGGAGAAGTTGACAGTTGACCCAGGCTGGGCACCGATAAGGCGGCTCCAGGGCTTCAAGAGACAG
Seq A exon
GTAGGAAGGCAAGCGGGCGCCTTGGGCAGGGCACGCCCCGGGCATCTGAAGGCCTCTGCCCCGCCTGGCTCCTGTAGGTAGTGGTTGGCGTGGAAGTGAGAGACCATGGGAGATCTGGCTGTGAGGTGGCTGCGTGAGCACTGAGGAGGGTCTCAGCTCTACATCTGGAGCCCGGGGTGGGGAGTGGCGGGTAATCGGGTCCCCGCAGTCCAGCTGCTCTTCTCCTGGAACAGCATACCCCCCCCCCCGCCCCCGCCTCCTCTGTACTGCCCGGGTGAAGCCTGCAGAGCCAGCGCACTTCCTGGCGATGTTCCAGGCCACAGCCAGCACCTGCCAGGCACCCAGGGCCCCCGTAGGAACCGCGCCTCAGTGCCCCTGGGGTCACAGGGCACCAGCCCAGGTCAGGTTTGGAAGAGTCATCCTGACCCGCACGGGTGGCCTTAGGTTGAAGGAAGGAACATTATCAAGCTTTCCGGACTTTGGAATCGCAGACACACTAGGTCGCAGGTCTGGGCAGCGCCTGCAGTAGTGACTGGAGCTCTTGAGTTCTTCAGTCTCCCTCTGGTCACGTTCATCATTCAGGCTAGTCCGCCCGCCCGCCTCCCAGTCCCGTCATCAGTCAGTCCTTGATCTCTGCTGCCCCCAGCATCCCCACATCTCAAGTGCGCACTAGACCCCCTTCCAACCTTCTCCCCAGCAGTCTGTGATTAGAATGACTTGCTGACTGTGACAAATTAGCCAGGGCTTACATCCATGCGTATGCTGGTGTAAACTTTGCTGAACGTGGCTTTTGAACGCGATATTTCATACCTATAAAACGACTGCAAGTTGTTTTATTGTAAAAAGAATTCAGAACATCAGTTAGAATTACAGATTTTAACATTAACATACCTGTCAGCGCTTGTTTAATGTCCTGTACTGAACTGCACACTGCTTACGTGTCTCTGATACAGAAACATGTGCACACACGCGAGCACACCCCGCACTATGCAGACACCTAATGTGCGCATGCTCATAAGAGTGCTATGCCCGCACATGTGCACACCCTACACACAACTCTGGGTTCAAGCGGGCGTACTCTCCTTGTGAAGACTGAAGGAGGTGATCCTGTGCAGGCAAGGGTTGGCTTTTTGGTTTTAAAACAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACATGGATGGGTGCTGAGGGGTCTCGGCATAGTTAAGCATGTACCCCAAGATTTGCACTTAGATTTTAAAAGCAGTTGAATTTGGGCTGAGCCTTTTTGTCCAGACTGGCCTTGAACTCCTGGGCTCTAGTGGTATTGTAGTGAATGGGTATCCAGCATCTCAGTAGCTGGGACTATTTTTGGGTAGTGGGGGGCTGGGAAGATGGCTCTGTCAGTGAACTGTTTGCTGTGCAAGCATTCAGACCTGCAGCAAGCTCTGTAACCCCAGCCCTGGGTGGGAGGAGAGAGGAGGCGGATCCCTCCTACCTAATTGGCCAGCCAGCCTAGTAGAAAAAGCAGAGCTATGGGTTCAAAGACATTGTCTCAAAAAGTAAGGGAGCCGAGCAGCTGTGGAGGACACCAGTGATCAACCCTGGTCTTCACACCCACGCAACACCACACACTCACACTCACACCACACATGCGCGCGCATACACACACACACCACTTAATTTGAGTAATGAAAACCTGTCTGCAAATCTATTTTTATTAGTTGTCTTTAAAGGGAATGAAACGGCCTTTTAAATTCTTTTGTTTTTGTTTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTTTGTATACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCTGGCCTTTTAAATTCTTTTTTTTTTTTTTTTTAAAAAGATTTATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACCCCAGAAGAGGGTATCAGATTTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGGGACCTTCGGAAGAGCAGTCGGCGCTCTTAACCACTGAGCCATCTCGCCAGCCCAGCCTTTTAAATTCTTACTGAGCTGAACAGTCAGGTTACTTTGATTGCAGACTCAGTTCTGTAACAGCATAGCAGGGTTTTCAGTGACTCTTCTGCCCCCTGGAACTCCCAAACAAATTCTTCCTGGGCTTCTGTCTGCTGTCAAACAGGCCTCTTCCTCCTGAGTGAGTGGCATGGCGTGTAGTTTAGTGACCACGGTGGCGCTCCCAGCAAGCCCAGTGGGAGGAACATGTGACACACATAGCAAGACTATGCGACTCACCCACCACTCTGGGTAGCTGTGATGTCCCCTCTGGCTCTAACCAGTGGCTTCTCCTGCAG
Seq C2 exon
GCAGAGATGCAGCTGTTCCCTCTCCTGTTCTCGCTGCTGCTGACCTCCACTCCAGGGTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021223-Papln:NM_130887:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: