RnoALTA0028885-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000480 | Phf1
Description
PHD finger protein 1 [Source:RGD Symbol;Acc:1303205]
Coordinates
chr20:5530166-5530560:+
Coord C1 exon
chr20:5530166-5530270
Coord A exon
chr20:5530403-5530542
Coord C2 exon
chr20:5530543-5530560
Length
140 bp
Sequences
Splice sites
5' ss Seq
CAGGTCACT
5' ss Score
3.41
3' ss Seq
CTCTTACAGCTTCCCTTCAGGGC
3' ss Score
5.73
Exon sequences
Seq C1 exon
TTTCATTTCAGGGAGGGAGATTAAAAAGAGGAAATGCCTTTTTGGTCTCCATGCTCGGACCCCTCCTCCTGTGGAGCTTCTCACTGGAGATGGATCCCCCACCAG
Seq A exon
GGCAGGGCCCTGGGGGAGGGGTCTCACGTCCCCTGGGGAAACGCCGGAAGTCGGAGCCAGAACCCTTGAGGAGGAGGCAGAAGGGGAAAGTGGAGGAACTGGGGCCACCCACAGCAGCTCACAGTCGGCATGGGTCCCAG
Seq C2 exon
GAGCAGAGGGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000480-14-25,14-24,14-23,14-22-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]