RnoALTA0029450-4/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005504 | Pkp4
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45372491-45375171:+
Coord C1 exon
chr3:45372491-45372679
Coord A exon
chr3:45374952-45375035
Coord C2 exon
chr3:45375036-45375171
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TCTTTCCCCAAACTTTGCAGTAG
3' ss Score
5.66
Exon sequences
Seq C1 exon
GCTTACGGAGTTCCTATGCCAGTCAGCATAGTCAGCTTGGACAAGATCTTCGTTCAGCTGTGTCTCCTGACTTGCACATCACTCCTATATATGAAGGGAGGACCTACTACAGTCCAGTGTACCGCAGCCCAAACCACGGGACCGTGGAACTCCAAGGATCACAGACAGCACTGTACCGCACAGGCTCAG
Seq A exon
TAGGCATTGGGAATCTACAAAGGACTTCCAGCCAGAGAAGCACCCTTACATACCAAAGAAATAACTATGCTCTGAACACAGCAG
Seq C2 exon
CTACCTATGCGGAGCCCTACAGGCCTGTACAGTACCGAGTCCAAGAGTGCAGCTATAACCGGCTGCCACACACAGGGCCGGCTGACGATGGTGCCACGAGATCCCCATCAATAGACAGCATTCAGAAGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504-31-34,31-33,31-32,31-31-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=NA C2=0.486
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCAGCTGTGTCTCCTGAC
R:
GACTCGGTACTGTACAGGCCT
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]