RnoALTA0030110-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2086004-2088181:+
Coord C1 exon
chr12:2086004-2086079
Coord A exon
chr12:2088038-2088040
Coord C2 exon
chr12:2088041-2088181
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATCTACGATTGGTGTCTCAGCAG
3' ss Score
1.95
Exon sequences
Seq C1 exon
GTCGTGACTCGCCTTATTCATCTGCTAAGCCAGAAAATTCTGGGCAATCTGCAGCAGTTGCAAGGACCCTTTCCAG
Seq A exon
CAG
Seq C2 exon
GCTCCGGACTCAGTGTCCCGCAGCACTCAGAGCTGACCAACCCAGCCAGCAACCTGTCCACTGTGGCTATCCTCCCTGTGTGTGCTGAGGTGCCCATGATGGCCTTTACTCTGGAACTTCAGCATGCCCTGCAAGCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977-25-26,25-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTGCAAGGACCCTTTC
R:
GGAGGATAGCCACAGTGGACA
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]