HsaALTA0006477-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000032444 | PNPLA6
Description
patatin like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:HGNC:16268]
Coordinates
chr19:7551362-7554015:+
Coord C1 exon
chr19:7551362-7551437
Coord A exon
chr19:7553872-7553919
Coord C2 exon
chr19:7553920-7554015
Length
48 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCATCCATTGGGTTCTTAGCAG
3' ss Score
3.44
Exon sequences
Seq C1 exon
GTCGTGACCCGCCTTATCCACCTACTGAGCCAGAAAATTCTAGGGAATTTGCAGCAGCTGCAAGGACCCTTCCCAG
Seq A exon
CAGGCTCTGGGTTGGGTGTGCCCCCACACTCGGAACTCACCAACCCAG
Seq C2 exon
CCAGCAACCTGGCAACTGTGGCAATCCTGCCTGTGTGTGCTGAGGTCCCCATGGTGGCCTTCACGCTGGAGCTGCAGCACGCCCTGCAGGCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000032444-46-58,46-57,46-56,46-55-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCTTATCCACCTACTGA
R:
CAGCGTGAAGGCCACCATG
Band lengths:
137-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains