HsaALTA0006477-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000032444 | PNPLA6
Description
patatin like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:HGNC:16268]
Coordinates
chr19:7551362-7554015:+
Coord C1 exon
chr19:7551362-7551437
Coord A exon
chr19:7553875-7553919
Coord C2 exon
chr19:7553920-7554015
Length
45 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATCCATTGGGTTCTTAGCAGGCT
3' ss Score
3.29
Exon sequences
Seq C1 exon
GTCGTGACCCGCCTTATCCACCTACTGAGCCAGAAAATTCTAGGGAATTTGCAGCAGCTGCAAGGACCCTTCCCAG
Seq A exon
GCTCTGGGTTGGGTGTGCCCCCACACTCGGAACTCACCAACCCAG
Seq C2 exon
CCAGCAACCTGGCAACTGTGGCAATCCTGCCTGTGTGTGCTGAGGTCCCCATGGTGGCCTTCACGCTGGAGCTGCAGCACGCCCTGCAGGCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000032444-46-58,46-57,46-56,46-55-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCTTATCCACCTACTGA
R:
CAGCGTGAAGGCCACCATG
Band lengths:
137-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains