RnoALTA0030110-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2086004-2088181:+
Coord C1 exon
chr12:2086004-2086079
Coord A exon
NA
Coord C2 exon
chr12:2088041-2088181
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TACGATTGGTGTCTCAGCAGGCT
3' ss Score
4.86
Exon sequences
Seq C1 exon
GTCGTGACTCGCCTTATTCATCTGCTAAGCCAGAAAATTCTGGGCAATCTGCAGCAGTTGCAAGGACCCTTTCCAG
Seq A exon
NA
Seq C2 exon
GCTCCGGACTCAGTGTCCCGCAGCACTCAGAGCTGACCAACCCAGCCAGCAACCTGTCCACTGTGGCTATCCTCCCTGTGTGTGCTGAGGTGCCCATGATGGCCTTTACTCTGGAACTTCAGCATGCCCTGCAAGCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977-25-26,25-25-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTGCAAGGACCCTTTC
R:
GGAGGATAGCCACAGTGGACA
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]