MmuALTA1002071-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000004565 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3532352-3534670:+
Coord C1 exon
chr8:3532352-3532427
Coord A exon
NA
Coord C2 exon
chr8:3534530-3534670
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCTGATTGGTGTCTCAACAGGCT
3' ss Score
7.98
Exon sequences
Seq C1 exon
GTTGTGACCCGCCTTATTCATCTGCTAAGCCAGAAAATTCTAGGCAATCTGCAGCAGTTGCAAGGACCCTTTCCAG
Seq A exon
NA
Seq C2 exon
GCTCCGGGCTCAGTGTTCCGCAGCACTCGGAACTGACCAACCCAGCCAGCAATCTGTCTACTGTAGCTATCCTCCCTGTGTGTGCTGAGGTGCCCATGATGGCCTTTACTCTGGAACTGCAGCATGCTCTGCAAGCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004565-40-41,40-40-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCGCCTTATTCATCTGC
R:
GCATGCTGCAGTTCCAGAGTA
Band lengths:
199-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types