BtaALTA0022762-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17637701-17640128:+
Coord C1 exon
chr7:17637701-17637776
Coord A exon
NA
Coord C2 exon
chr7:17639988-17640128
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
ATCCTTTGGGGTCTCAGCAGGCT
3' ss Score
4.07
Exon sequences
Seq C1 exon
GTCGTGACCCGCCTCATCCACCTGCTGAGTCAGAAGATTCTGGGGAATTTGCAGCAGCTGCGAGGACCCTTCCCAG
Seq A exon
NA
Seq C2 exon
GCTCGGGACTAGGTGTACCCCCTCACTCGGAGCTCACCAACCCCGCCAGCAACCTGTCAACAGTGGCAGTGCTGCCTGTGTGTGCCGAGGTGCCCATGGTGGCCTTCATGCTGGAGCTGCAGCACGCTCTGCAAGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137-31-26,31-25-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCACCTGCTGAGTCAGA
R:
CGAGTGAGGGGGTACACCTAG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development