RnoALTA0033392-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002750 | Rc3h1
Description
ring finger and CCCH-type domains 1 [Source:RGD Symbol;Acc:1563512]
Coordinates
chr13:78771467-78772441:+
Coord C1 exon
chr13:78771467-78771748
Coord A exon
chr13:78772227-78772289
Coord C2 exon
chr13:78772290-78772441
Length
63 bp
Sequences
Splice sites
5' ss Seq
CCTGTACGT
5' ss Score
5.32
3' ss Seq
ACATAATTTTGCTCCCTTAGGCT
3' ss Score
8.4
Exon sequences
Seq C1 exon
ATTTCGTAAAATGAACAAACGTCTGGTTCCCAGAAGACCTTTGAGTGCCTCTTTGGGTCAACTTAATGAGGTGGGCCTGCCTTCAGCGCCCATACTTCCCGATGAAAGCACAGTGGATTTGCCCAGCAGAAAACCTCCTGCACTCCCAAATGGAATTGTATCGGCAGGGAACACAGTGACACAGCTGATTCCTCGTGGGACAGACCCCGGCTTTGATTCCACTCTGAAACCAGTAAAGCTAGACCACCTGAGCAGCAGTGCTCCAGGGTCCCCTCCCGACCT
Seq A exon
GCTGGAATGTGCCCCTAAGAGTATCCCTGCCTTACCTGTGAATCCGCATCCTGTACCTCCAAG
Seq C2 exon
GGCGCCGACAGATCTGCCTCCCATGCCCGTCCCCAAACCAATTCAGATGGTGCCTCGAGGTTCGCAGTTATATCCAGCGCAGCAAGCAGACGTTTACTACCAGGATCCCCGAGGAAGTGCTCCAGCTTTTGAGACAGCACCTTATCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002750-16-24,16-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGACCCCGGCTTTGATTC
R:
ACCTCGAGGCACCATCTGAAT
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]