HsaALTA1027440-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000135870 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr1:173963973-173965120:-
Coord C1 exon
chr1:173964839-173965120
Coord A exon
chr1:173964079-173964187
Coord C2 exon
chr1:173963973-173964078
Length
109 bp
Sequences
Splice sites
5' ss Seq
CCTGTACGT
5' ss Score
5.32
3' ss Seq
CCATAATATTATTCCCTTAGGCT
3' ss Score
6.36
Exon sequences
Seq C1 exon
ATTTCGTAAAATGAATAAGCGCCTGGTTCCGAGAAGACCCTTGAGTGCCTCTTTGGGTCAACTTAATGAGGTGGGCCTGCCTTCAGCAGCTATCCTTCCAGATGAAGGTGCAGTGGATCTCCCTAGCAGAAAACCTCCTGCTCTGCCAAATGGAATTGTATCAACAGGGAATACAGTAACACAGCTTATTCCGCGAGGGACAGACCCCAGCTATGATTCTAGTCTGAAACCAGGAAAAATAGATCATCTGAGCAGTAGTGCTCCTGGATCCCCTCCTGACCT
Seq A exon
GCTAGAATCTGTTCCTAAGAGTATTTCTGCCTTACCTGTGAATCCACATTCTATACCTCCAAGGGGGCCAGCAGATCTGCCTCCAATGCCTGTTACCAAACCACTTCAG
Seq C2 exon
ATGGTACCTCGAGGTTCTCAGTTATATCCAGCACAACAGACGGATGTTTATTATCAGGATCCTCGAGGAGCAGCTCCGCCATTTGAACCAGCACCTTATCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135870-31-33,31-32,31-31-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGATCTCCCTAGCAGA
R:
CTGCTCCTCGAGGATCCTGAT
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains