HsaEX0052833 @ hg38
Exon Skipping
Gene
ENSG00000135870 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr1:173963973-173970617:-
Coord C1 exon
chr1:173970505-173970617
Coord A exon
chr1:173964839-173965120
Coord C2 exon
chr1:173963973-173964187
Length
282 bp
Sequences
Splice sites
3' ss Seq
TGCCTATGCTTTTTATATAGATT
3' ss Score
7.35
5' ss Seq
CCTGTACGT
5' ss Score
5.32
Exon sequences
Seq C1 exon
CCTCCACAGCATAGCAAATACAAAACATACATGTGTCGAGATATGAAGCAGAGAGGAGGATGCCCTCGTGGGGCCAGCTGTACATTTGCACACTCACAGGAGGAACTGGAAAA
Seq A exon
ATTTCGTAAAATGAATAAGCGCCTGGTTCCGAGAAGACCCTTGAGTGCCTCTTTGGGTCAACTTAATGAGGTGGGCCTGCCTTCAGCAGCTATCCTTCCAGATGAAGGTGCAGTGGATCTCCCTAGCAGAAAACCTCCTGCTCTGCCAAATGGAATTGTATCAACAGGGAATACAGTAACACAGCTTATTCCGCGAGGGACAGACCCCAGCTATGATTCTAGTCTGAAACCAGGAAAAATAGATCATCTGAGCAGTAGTGCTCCTGGATCCCCTCCTGACCT
Seq C2 exon
GCTAGAATCTGTTCCTAAGAGTATTTCTGCCTTACCTGTGAATCCACATTCTATACCTCCAAGGGGGCCAGCAGATCTGCCTCCAATGCCTGTTACCAAACCACTTCAGATGGTACCTCGAGGTTCTCAGTTATATCCAGCACAACAGACGGATGTTTATTATCAGGATCCTCGAGGAGCAGCTCCGCCATTTGAACCAGCACCTTATCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135870_MULTIEX1-6/8=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=0.926 C2=1.000
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=71.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGATATGAAGCAGAGAGGAGGA
R:
CCTGCTGATAAGGTGCTGGTT
Band lengths:
292-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development