GgaEX1048713 @ galGal4
Exon Skipping
Gene
ENSGALG00000004587 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr8:7341024-7345134:+
Coord C1 exon
chr8:7341024-7341136
Coord A exon
chr8:7344358-7344639
Coord C2 exon
chr8:7344917-7345134
Length
282 bp
Sequences
Splice sites
3' ss Seq
TGTAACTCCTTATTTCAAAGATT
3' ss Score
6.64
5' ss Seq
CTTGTACGG
5' ss Score
2.2
Exon sequences
Seq C1 exon
CCTCCTCAGCACAGCAAATACAAGACGTACATGTGCCGAGACATGAAACAGAGAGGAGGATGCCCCCGAGGGGCCAGCTGCACCTTTGCACATTCACAGGAGGAGCTAGAGAA
Seq A exon
ATTTCGTAAAATGAACAAGCGTCTGGTTCCAAGAAGACCTCTGAGTGCCTCCCTGGGCCAGCTGAATGAGGTGGGCCTGCCTTCAGGAGCTATCCTCTCGGATGAAGGGGGAGTGGACTTGCCCAATAGGAAAACTTCTGCTCTGCCAAACGGAATTGTGTCAACAGGCAGCACAGTGACGCAACTCATTCCTCGAGGGACTGAGTCCGGTTATGAAACTGCTCTGAAGCCAGGGAAGATGGACCATCTGAGTAGCAGTGCCCCTGGATCCCCTCCTGACTT
Seq C2 exon
GCTGGAATCTGTCCCCAAGAGCTCTATTTCTGCCTTACCAGTGAACGCTCATCCTGTGCCTGCTCGGGCACCAACAGATCTGCCTTCAGTGTCTGTCACAAAACAGTTGCAAATGGTACCTCGTGGATCTCAGTTGTATAACACTCAGCAGGCAGATATCTTTTATCAAGATCATAGAGGAGCTGCCCCACCATTTGAGCCAGCACCCTACCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.728 A=0.927 C2=0.919
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=71.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTACATGTGCCGAGACATG
R:
GTAGGGTGCTGGCTCAAATGG
Band lengths:
300-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]