GgaEX1048713 @ galGal3
Exon Skipping
Gene
ENSGALG00000004587 | RC3H1
Description
NA
Coordinates
chr8:7676372-7680483:+
Coord C1 exon
chr8:7676372-7676484
Coord A exon
chr8:7679707-7679988
Coord C2 exon
chr8:7680266-7680483
Length
282 bp
Sequences
Splice sites
3' ss Seq
TGTAACTCCTTATTTCAAAGATT
3' ss Score
6.64
5' ss Seq
CTTGTACGG
5' ss Score
2.2
Exon sequences
Seq C1 exon
CCTCCTCAGCACAGCAAATACAAGACGTACATGTGCCGAGACATGAAACAGAGAGGAGGATGCCCCCGAGGGGCCAGCTGCACCTTTGCACATTCACAGGAGGAGCTAGAGAA
Seq A exon
ATTTCGTAAAATGAACAAGCGTCTGGTTCCAAGAAGACCTCTGAGTGCCTCCCTGGGCCAGCTGAATGAGGTGGGCCTGCCTTCAGGAGCTATCCTCTCGGATGAAGGGGGAGTGGACTTGCCCAATAGGAAAACTTCTGCTCTGCCAAACGGAATTGTGTCAACAGGCAGCACAGTGACGCAACTCATTCCTCGAGGGACTGAGTCCGGTTATGAAACTGCTCTGAAGCCAGGGAAGATGGACCATCTGAGTAGCAGTGCCCCTGGATCCCCTCCTGACTT
Seq C2 exon
GCTGGAATCTGTCCCCAAGAGCTCTATTTCTGCCTTACCAGTGAACGCTCATCCTGTGCCTGCTCGGGCACCAACAGATCTGCCTTCAGTGTCTGTCACAAAACAGTTGCAAATGGTACCTCGTGGATCTCAGTTGTATAACACTCAGCAGGCAGATATCTTTTATCAAGATCATAGAGGAGCTGCCCCACCATTTGAGCCAGCACCCTACCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=0.930 C2=0.865
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=71.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTACATGTGCCGAGACATG
R:
GTAGGGTGCTGGCTCAAATGG
Band lengths:
300-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]