MmuEX6028629 @ mm10
Exon Skipping
Gene
ENSMUSG00000040423 | Rc3h1
Description
RING CCCH (C3H) domains 1 [Source:MGI Symbol;Acc:MGI:2685397]
Coordinates
chr1:160950222-160951829:+
Coord C1 exon
chr1:160950222-160950334
Coord A exon
chr1:160950841-160951122
Coord C2 exon
chr1:160951615-160951829
Length
282 bp
Sequences
Splice sites
3' ss Seq
AACATTTGCTTTTCATACAGGTT
3' ss Score
8.07
5' ss Seq
CCTGTACGT
5' ss Score
5.32
Exon sequences
Seq C1 exon
CCTCCACAGCATAGCAAATACAAAACATACATGTGTCGAGATATGAAGCAAAGGGGAGGATGCCCTCGTGGTGCCAGCTGTACGTTTGCACATTCACAGGAAGAACTGGAAAA
Seq A exon
GTTTCGTAAAATGAACAAACGTCTGGTTCCCAGAAGACCCTTGAGTGCCTCTTTGGGTCAACTTAATGAGGTGGGCCTGCCTTCAGCACCTATACTTTCTGATGAAAGTGCAGTGGACTTGTCCAACAGAAAACCTCCTGCACTCCCAAATGGAATTGCATCGTCAGGGAGCACAGTGACACAACTGATTCCACGTGGGACAGACCCCAGCTTTGATTCTTCTCTGAAACCAGTAAAGCTAGACCACCTGAGCAGTAGTGCTCCGGGGTCCCCTCCTGACCT
Seq C2 exon
GCTGGAATCTGCCCCTAAGAGTATTTCTGCCTTACCTGTGAATCCACATCCTGTACCTCCAAGGGGACCAACAGATCTGCCTCCCATGCCTGTCACCAAACCAATTCAGATGGTACCTCGAGGTTCTCAGCTATATCCAGCACAACAAGCAGATGTTTATTATCAGGATCCTCGAGGAAGTGCCCCAGCTTTTGAGACAGCACCTTACCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040423-'5-22,'5-18,16-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=0.979 C2=0.866
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=71.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGAGATATGAAGCAAAGGGG
R:
CTGCTGGTAAGGTGCTGTCTC
Band lengths:
294-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types