DreEX0007416 @ danRer10
Exon Skipping
Gene
ENSDARG00000063182 | RC3H1 (2 of 2)
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr2:7297107-7302719:-
Coord C1 exon
chr2:7302488-7302719
Coord A exon
chr2:7299753-7299974
Coord C2 exon
chr2:7297107-7297306
Length
222 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTGATACTCTGTAGGTA
3' ss Score
7.62
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
ATGCTCCTCCTCCAACCTGGGAGCAGCTTGAGAAGGGTCTTGTGGCGGTAAAGACGGTGGTGCATGGCCTTGTGGACTTCATCCAGAACCACAGCAAGAAGGGTGCAGACACTCAACAGCCCCCACAGCACAGCAAATACAAGACATACATGTGCAGAGACATGAAGCAGAAAGGAGGCTGTCCCAGAGGAGCTAGCTGCACTTTCGCTCACTCTCAGGAGGAGCTGGAAAA
Seq A exon
GTATCGTAAAATGAACAAACGTCTTGCTGCGCGAGTGCCCTGCACCCCTGGCCTGCTGCCTGAGGACGTGATCCCACTGGAGCCAACCCGGAAGGGCTCTGGCATTACCAATGGTCTTCCCCAGCTCATCCCCAGAGGCACAGACTCTTCCACGTATGACCTCTTACTTAAACCCAAAATGGATGGCCCTAGTCTGAGTGCTCCTGGGTCACCACCAGACTC
Seq C2 exon
TTTGGATAAACCTGGCTTGTCTCTGACACCCCACCCTGTGCCTCATCCCAGAACGGAGCACTTAACCATGCCCAAGCAGGGGGCAGTCGTGCCCAGAGGTACACCGCAGATGTATCCACAGCAGCAGCCTGAGCTCTTCTATCCAGAGCCCGCCAGACCTCCTCCCTCAGGATCTCAGTATGATGCTCAGTACCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063182_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=0.920 C2=1.000
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=34.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGCCTTGTGGACTTCAT
R:
GGCTGCTGCTGTGGATACATC
Band lengths:
300-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]