DreEX6098329 @ danRer10
Exon Skipping
Gene
ENSDARG00000062550 | rc3h1
Description
ring finger and CCCH-type domains 1 [Source:ZFIN;Acc:ZDB-GENE-050208-702]
Coordinates
chr22:15972726-15974285:+
Coord C1 exon
chr22:15972726-15972838
Coord A exon
chr22:15972917-15973198
Coord C2 exon
chr22:15974083-15974285
Length
282 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTGTGTACCGACAGATA
3' ss Score
9.98
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCTCCTCAGCACAGCAAATACAAGACCTACATGTGCCGTGACATGAAGCAGAAGGGTGGCTGTCCCCGTGGAGCGAGCTGCACCTTTGCTCACTCTCAGGACGAGCTAGAAAA
Seq A exon
ATACCGTAAGATGAACAAGCGTGTGGGGATGCGCCGTCAGCTCAGTCAGTCTCTTACCCAGCTGAATGAGCTGGATCTGGGACTGTTATCTGACGACGGGCCGCCCATGGAGGGTCTGCCACGCAAATCCTCCTCTATCACCAACGGGATACTGGCAGCGGGACCTGGATCGGCTCTGGCTCATCTGGTTTCCCGAGGCTCGGACCCATCTTATGAGCCCACACACAAACCTACCAAGATGGATTCTGGGAGCCTTAGTGCACCTGGCTCACCTCCAGACTC
Seq C2 exon
ATTGGAATCCATACCGAAACCATCAATGCTCATGAATGCCCAGTCCAGGATAGCAGGCGATGGCGCAGTGGGACAGAAGCACTTGTCTGCGGTGCCTAGAGTTCCTCAGATGTATTCGTCACACCAGCCTGACCTGTATTTCCCTGAAACAAGAGCACCACCACCACCATCTGCCTCATACGAATCCTCCCAGTATGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062550-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=0.937 C2=1.000
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=71.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGACCTACATGTGCCGTG
R:
TGGCATACTGGGAGGATTCGT
Band lengths:
294-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]