RnoALTA0035090-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002104 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:RGD Symbol;Acc:727896]
Coordinates
chr11:30385457-30385887:-
Coord C1 exon
chr11:30385801-30385887
Coord A exon
NA
Coord C2 exon
chr11:30385457-30385582
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
TGGAAATCCCATTCCAACAGTGG
3' ss Score
4.22
Exon sequences
Seq C1 exon
GTTTTCTTCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCATTCCTCCACCTCACACTCCACCAATAAGCATCCCAAACT
Seq A exon
NA
Seq C2 exon
TGGTGTCTGGGGCTAGAGGAAATGCCGAGTCTGCTGACAGTGCGAAAATGTATGGTTCTGCTGGGCCACCTGCTGCACCCACGAGTCTGCCCACCCCTCCTGTAACCCAGCCTGTTTCACTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002104-30-30,30-29-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATTCCTCCACCTCACACT
R:
GCAGTGAAACAGGCTGGGTTA
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]