Special

RnoALTA0035903-2/2 @ rn6

Alternative 3'ss

Gene
Description
senataxin [Source:RGD Symbol;Acc:1565575]
Coordinates
chr3:7720224-7721279:+
Coord C1 exon
chr3:7720224-7720411
Coord A exon
chr3:7721113-7721186
Coord C2 exon
chr3:7721187-7721279
Length
74 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
CCTGGTTCTGTCTCACACAGAAA
3' ss Score
8.44
Exon sequences
Seq C1 exon
AAAGCACAGGAGTATGGCTATGACCAGTCGATGATGGCGCGATTCTGCAAGCTGCTGGAAGAGAATGTGGAGCAGAACATGATTGGCAGGCTGCCGGTGCTACAGCTCACCATTCAGTACAGGATGCATCCAGACATATGTCTCTTCCCTTCTAATTACGTTTATAATAAAAACCTGAAGACAAATAG
Seq A exon
AAAATAAAAGAAGAAGATATTGATAAAATGTGTGCTTTAGAGCATATTTTCTGAATATGATTGCTTTTCTATAG
Seq C2 exon
ATTGACTGAAACCATTCGATGTTCATCAGAGTGGCCATTTCAGCCCTACCTCGTGTTTGATGTTGGAGATGGTTCAGAACAACGGGATAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013491-26-26,26-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

ORF disruption when splice site is used (sequence inclusion)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):

C1:
PF130871=AAA_12=PU(27.7=88.9)
A:
NA
C2:
PF130871=AAA_12=FE(15.3=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACATGATTGGCAGGCTGC
R:
TCAAACACGAGGTAGGGCTGA
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]