RnoALTA0035903-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013491 | Setx
Description
senataxin [Source:RGD Symbol;Acc:1565575]
Coordinates
chr3:7720224-7721279:+
Coord C1 exon
chr3:7720224-7720411
Coord A exon
NA
Coord C2 exon
chr3:7721187-7721279
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
ATATGATTGCTTTTCTATAGATT
3' ss Score
7.71
Exon sequences
Seq C1 exon
AAAGCACAGGAGTATGGCTATGACCAGTCGATGATGGCGCGATTCTGCAAGCTGCTGGAAGAGAATGTGGAGCAGAACATGATTGGCAGGCTGCCGGTGCTACAGCTCACCATTCAGTACAGGATGCATCCAGACATATGTCTCTTCCCTTCTAATTACGTTTATAATAAAAACCTGAAGACAAATAG
Seq A exon
NA
Seq C2 exon
ATTGACTGAAACCATTCGATGTTCATCAGAGTGGCCATTTCAGCCCTACCTCGTGTTTGATGTTGGAGATGGTTCAGAACAACGGGATAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013491-26-26,26-25-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF130871=AAA_12=PU(27.7=88.9)
A:
NA
C2:
PF130871=AAA_12=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACATGATTGGCAGGCTGC
R:
TCAAACACGAGGTAGGGCTGA
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]