RnoALTA0037801-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3824155-3826091:-
Coord C1 exon
chr3:3825991-3826091
Coord A exon
NA
Coord C2 exon
chr3:3824155-3824293
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTTAATACTCTGAAGGCAGGCC
3' ss Score
-1.95
Exon sequences
Seq C1 exon
GGTGCAAGCCGCCGGACTTCCGTGACTACCAGAAGCGTGATACGCGTGTGGTCGCCTGGGCGACGAAGCTGGCACTGAATTGTAGAAGGGAGGCCTAGCAG
Seq A exon
NA
Seq C2 exon
GCCGAAGCCATGGACATAGATGCCGAACGAGAGAAGGTAACACAGGAGATCCAGGAGCTCGAAAGGATTCTGTATCCTGGATCCTCCAGCGTCCACTTTGAGGTCTCTGAATCCAGTCTCAGTTCGGACTCTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGCTGGCACTGAATTGT
R:
TTCGAGCTCCTGGATCTCCTG
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]