RnoALTA0040255-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000031126 | Tecta
Description
tectorin alpha [Source:RGD Symbol;Acc:1309824]
Coordinates
chr8:46613984-46617906:-
Coord C1 exon
chr8:46617611-46617906
Coord A exon
chr8:46614092-46614094
Coord C2 exon
chr8:46613984-46614091
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
TTCTGTGTTTTCCTTTTTAGCAG
3' ss Score
10.61
Exon sequences
Seq C1 exon
ACCTCTCACCCCCAGCTGCAACGAGCTACAGTTCTCGCAATACGCAGCCACGTGTGACAATGTGCACATCCAGGCCATGCAGGGTGACGGTTACTGCCTGAAGCTCACCGACATGAAGGGCTTCTTTCAGCCCTGCTATGGGCTCCTGGATCCCCTCCCCTTCTACGAGTCCTGCTACCTGGACGGCTGCTACAACCACAAGAAGTTCCAGCTGTGCGGCTCCCTGGCTGCCTACGGGGAGGCCTGCCGTTCCTTCGGCATCCTTAGCACGGAGTGGATTGAGAAAGAGAATTGCT
Seq A exon
CAG
Seq C2 exon
GAGTGGTTGAAGACCCCTGTGTGGGGGCAGACTGTCCCAACAGGACCTGCGAGCTGGACAACGGAGGAGAATTATGTGGCTGCATTGAGCCACCCCCCTATGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031126-20-20,20-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=75.0)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTCCTTCGGCATCCTTAG
R:
CAGCTCGCAGGTCCTGTTG
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]