RnoALTA0045560-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000058932 | Zfp202
Description
zinc finger protein 202 [Source:RGD Symbol;Acc:1562294]
Coordinates
chr8:44063498-44064530:+
Coord C1 exon
chr8:44063498-44063586
Coord A exon
chr8:44064168-44064400
Coord C2 exon
chr8:44064401-44064530
Length
233 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTATCTTGCATTTTAAACAGTAG
3' ss Score
5.65
Exon sequences
Seq C1 exon
AGGTTCCAGTGTCCCAGCATGCAGACCTTCCCACAGAACAAGGGTCTGGACACCCAGAGATGGTTGCTCTTCTCACTGCTCTCTCTCAG
Seq A exon
TAGCCTGAAGAAGAATATAATTTCGCCTGGAGAAACATAATGGGTTGGAGAAACAGAAGCAAGGCCAGTGTTTTCCTCAAGTGCTGAAGGTTCAGAAGCAACACCATTTCCAGGCTCCCCAAGGGAAATCCTCCTGCCTCTTCCCACTCCCTCTGTCTTTGGATGGACCCTGCTCAAAACACAATAAGCTACCTGAAGCATCACATCCTGATTGGATCCTTGTGTCATTGCAG
Seq C2 exon
GGACTGGTCACATTCAAGGATGTGGCTCTGTGCTTCTCACAAGATCAATGGAGTGATCTGGATCCAACACAAAAAGAATTCTATGGAGAATATGTCTTGGAAGAAGATTGTGGAATTGTGGTCTCTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058932-13-16,13-15,13-14-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCAGTGTCCCAGCATG
R:
ACAGAGAGACCACAATTCCACA
Band lengths:
218-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]