RnoINT0167844 @ rn6
Intron Retention
Gene
ENSRNOG00000058932 | Zfp202
Description
zinc finger protein 202 [Source:RGD Symbol;Acc:1562294]
Coordinates
chr8:44063498-44064530:+
Coord C1 exon
chr8:44063498-44063586
Coord A exon
chr8:44063587-44064400
Coord C2 exon
chr8:44064401-44064530
Length
814 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GGATCCTTGTGTCATTGCAGGGA
3' ss Score
6.44
Exon sequences
Seq C1 exon
AGGTTCCAGTGTCCCAGCATGCAGACCTTCCCACAGAACAAGGGTCTGGACACCCAGAGATGGTTGCTCTTCTCACTGCTCTCTCTCAG
Seq A exon
GTAAAACCTAATTCAAAATACATATTTGAGGATTTGTTGGGTGTTAGCCATATGCTGAACAATAATGGATACAAGTATGCATGCTTAAAGCATGAGTTTTCTGTTTTTTCTGTGGGGATGTGGGATATAGGAAGAAACTGAAATTAAACAACTGTTTTCAGCTCCAATCTTCATCGTCTCTTTATTTGCCAGAGGTACTAACGACCCTTTTCTTCAGCTAAACTACAACTCCACAGGTACTAACTAAAGGCACTAAATGAGATCATTTTGCAGTCTTCAGTACAACTTTGAAGTTGTTAAGTGAACAGGGCTTGGTTTTATCCTTTGTAAGAATGTCTGGCATGACTGCTATAATATTTATGAGCTAACCCTCTTGATATGAAATTATAGGGCTGAGAAAAATGGATAGGATTCACTAGTGGTCTAGTGGGAGAAAATATCTTTTTTGTTCTGACCATGGATGTTAGTAGATGGACTCATTTGGGAACCATTCTTAGGAAAGATGGTTTTTACCAAGACCTCCCATTAAAACACCAAATAGAGAACTGAATGATTTAAGGTCTATCTTGCATTTTAAACAGTAGCCTGAAGAAGAATATAATTTCGCCTGGAGAAACATAATGGGTTGGAGAAACAGAAGCAAGGCCAGTGTTTTCCTCAAGTGCTGAAGGTTCAGAAGCAACACCATTTCCAGGCTCCCCAAGGGAAATCCTCCTGCCTCTTCCCACTCCCTCTGTCTTTGGATGGACCCTGCTCAAAACACAATAAGCTACCTGAAGCATCACATCCTGATTGGATCCTTGTGTCATTGCAG
Seq C2 exon
GGACTGGTCACATTCAAGGATGTGGCTCTGTGCTTCTCACAAGATCAATGGAGTGATCTGGATCCAACACAAAAAGAATTCTATGGAGAATATGTCTTGGAAGAAGATTGTGGAATTGTGGTCTCTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058932:ENSRNOT00000084416:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCAGTGTCCCAGCATG
R:
ACAGAGAGACCACAATTCCACA
Band lengths:
218-1032
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]