MmuINT0178723 @ mm9
Intron Retention
Gene
ENSMUSG00000025602 | Zfp202
Description
zinc finger protein 202 [Source:MGI Symbol;Acc:MGI:1933401]
Coordinates
chr9:40016463-40017481:+
Coord C1 exon
chr9:40016463-40016551
Coord A exon
chr9:40016552-40017351
Coord C2 exon
chr9:40017352-40017481
Length
800 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GGATCCTTGTGTCATTGCAGGGA
3' ss Score
6.44
Exon sequences
Seq C1 exon
AGGTTCCAGTGTCCCAGGATGTAGACCTTCCCACAGAACAAGGGTCTGGACACCCAGAGATGGTTGCTCTTCTCACTGCTCTCTCTCAG
Seq A exon
GTAAATCCTAATTCAAAATACATATTTGAGGATTTGTTGGGTGTTAGCGATATGCTGAACAATAACGGATGTAAGTGTGCATGCTTAGAGTAAGTTTTCTGTTCTTTCTGTGGGGATGCAGGATAGGGGAAGAAACTATAAAATTAAACAGCTGTTTTCAGCTCCAGTCTTCATCGTCTCTTTATTTGCCAGAGGTACTAACTGTTCTTTTCTTCAGCTAGACTACAACTCCAGAAGTAGTAACTAAAGGCACTAAGTGGGGTCATTTTGCAGTATTCAGTACAACTTTGAAGTTGTTAAGTGAACAGATTTATCATTTGTAAGAGTGCCTAGCGTGACTGTGATAATATTTATGAGCTAAATCTCTTGATCTGAAATTACGGGGCTGAGAAAAGCAGATAGAATTCACTAGTGGTTTAGAGTTGTAGTCTAGTAGTTGTAGTCAAGTAGTCTTTCTTGTTCTGACCATGGAACAATTCTTAGAAAAGATGGTTTTTACCAAGGCCTCCCATTAAAACAGCAATTAGGGAGTTGAATGATTTAAGGCCCATCTTGGGTTTTAAACCATAACCTGAAGAAGAATATAGTTTGGCCTGAAGAAAGATGATAGGTTGGAGAAGCAGAAGTAAGGCCAGTGTTTTCCTCAAGTGCTGAAGGTTCCGAATCAGCACCATTACCAGGCTCCCCATGGAAATCCTTCTGCATCTTCCCATTCCCTTTGTCTCTGGATGGAGCCTACCTCAAAATACAGTAGGATACCTGAAGCATCACGTCCTGATGGGATCCTTGTGTCATTGCAG
Seq C2 exon
GGACTGGTCACATTCAAGGATGTGGCTCTGTGCTTCTCACAGGATCAGTGGAGTGATCTGGATCCAACACAAAAAGAATTCTATGGAGAGTATGTCTTGGAAGAAGACTGTGGAATTGTGGTCTCTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025602-Zfp202:NM_030713:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCCAGTGTCCCAGGATG
R:
ACAGAGAGACCACAATTCCACA
Band lengths:
219-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: