HsaINT0186419 @ hg19
Intron Retention
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:12994]
Coordinates
chr11:123598841-123599922:-
Coord C1 exon
chr11:123599834-123599922
Coord A exon
chr11:123598971-123599833
Coord C2 exon
chr11:123598841-123598970
Length
863 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
AAATCCTTATGTGGTTTCAGGGA
3' ss Score
5.95
Exon sequences
Seq C1 exon
AGGTCCCAGTGCCCGAGGACCCAGACCTTCCTGCAGAGAGGAGCTCTGGAGACTCAGAGATGGTTGCTCTTCTTACTGCTCTGTCACAG
Seq A exon
GTGTGCCCTAGTTACCTCTGTACCACAGAGAATTTGTTTGAAGAACCACTGGGCATAAGCCATACTAAACAGGTGAAGCAGGATGCACATTTACACTCTTGCCAGTTTTAAGCTCACAGTTCTGCAGGTACCTGGAAGGGGAGGAGATAATGAGATAAATTATCATACCTTATATTGGATCCACAGGCACCAACACCAGTTTATTTGCCATTGACTAGAAGAACTAACAAAATGGGATTATTTTGTAACACTCCAGTACAACTGCGAAGTTGTCAAATGAGGGTTTTTTAGTTTTTTTTTTTTTTAAAGGAATAAATTTGATAGTCATTTGTAAGTATGACAGACTGTACTGCTGAGACATTTAGGAAGTATTCACCATGATCAAAGCTCTGAAACTAAGCCATGTGGCTGGAGAAAAAGAAATAGAATTCATGTATGGTTTTAGATTGTAATCTAACTGAGGAAAAAAGTCTTGTTTTGGCTATAGAGTATAGAAACTATTGAAAGTGATTAGAGTCTTTAGGGAAAGTGTACTAGAAAAGATGAATTTTGCAGAAATGTATATAGCGTTAAAGTGTCAAGTAGGGAGCTGAATGATGATTTTTAAGACCTTTCCTAAATTTTAAACAATACCTTAAAGAAGAAGAACATAAGCTGGTCCTCAGGAAAAGTGGTGGAGTTGGAGGGGGCAGGGCCAGTGCCACAGGGGACACATGGCTCCCCCGAGAATGAGTTTAAGCAGCCCGCCACTCAAGCTCCTTTCATCTCCTAGAGGAGTCCACCTATTGTATGACCTTCAACAGGGACAAAATACGAGGCTACCCGTAGCATCACGTTTTGATGAAATCCTTATGTGGTTTCAG
Seq C2 exon
GGACTGGTAACGTTCAAGGATGTGGCCGTATGCTTTTCCCAGGACCAGTGGAGTGATCTGGACCCAACACAGAAAGAGTTCTATGGAGAATATGTCTTGGAAGAAGACTGTGGAATTGTTGTCTCTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261-ZNF202:NM_003455:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAGTGCCCGAGGAC
R:
ACAGAGAGACAACAATTCCACAGT
Band lengths:
217-1080
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)