BtaINT0165023 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016684 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr15:34850974-34852108:-
Coord C1 exon
chr15:34852020-34852108
Coord A exon
chr15:34851104-34852019
Coord C2 exon
chr15:34850974-34851103
Length
916 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGC
5' ss Score
5.28
3' ss Seq
GAATCCTTGTGTTGTTTCAGGGC
3' ss Score
8.52
Exon sequences
Seq C1 exon
AGGTTCCAGTGCTCCAGAACCCAGCCCTTCCTGAAGAGAGGAACTCTGGAAACTCCGAGATGGTCGCCCTTCTCACTGCTCTATCACAG
Seq A exon
GTTCGCCCTCATTTCCGTCTGCATCGCAGGGAACTCGAGGAACCATTGAGCATTAACCGTACGCTGAACAGATCAGACAGGACACAGGCTTCCACTGTCCATTGCCAGATTAAGCTCTGAGTTCCGCGCATGTCTGGAAGGGGAGGAGCTGCATCTCACGGAGAACATCTCAGTTGGATCTGCAGGCTCCAGAGCTTCTTGATTTGCCACTGACCTGAGGGACTAACAAAATGGGGTTGTTTTGGGAAAACTCTGGTACAACTTTGAAGTTGTCAAAGGAGGATTTGTTTTTGATTTTAAGAAATAAACTTGATAGTCATTTGTAAGGGTGACTGGCCTGCAAAATCAGTTTCTGATTTTGGTTGCTGTTCTCTTCTCTTTCAGTCAGGCCATGGCATTCAAGAAGAGCTCACCAGGTCAGGAGCCCTGAAACTAAGCTGAGTGGCTGGAGAATAAAGGAATAGAGCTCATCCTTGTTTTTAGATTGTAGAGCTGAAGAGGGAAGTCCTGTTGATGCTAGGTAGACTGTATAAGTGGTTCATGATTGGGTAAGGGCAGTTAGGAAGAACTTCCTAGAAAAGATGAATTTTTGCAGAGATACAGATTCCATTAGAATGATGACTTCCAAGACCTTTCTCATATTGTAAATAATATCCTTGGGAAGAACAGTGTAGTCTGGTGCTGAGGGAAAGTGATTGGATTGGAGGGAACAGGAAGAGGGTCAGTTGCAAGAGCAGAAACTTGGGAAGCAGCAACAGAAAATGAAACACAGGTGTCCTGAAAGGAACCAGGTGTCCCATCTGAGTTTCTCTGTCTCTTGGATGGACTGTGCCTGTATCAAAGACCTTCCTTCCAGGAATTAGATATGAGGCTCCATGAAGCATCACATTGTAATGGAATCCTTGTGTTGTTTCAG
Seq C2 exon
GGCTTGGTCGCTTTCAAGGATGTGGCCGTATGCTTCTCCCAGGACCAGTGGAGCGATCTGGATCCAACCCAGAAAGAGTTCTATGGGGAATACGTCTTGGAAGACGACTGTGGAATCGTGGTCTCCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016684:ENSBTAT00000022184:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCCAGTGCTCCAGAACC
R:
GAGACCACGATTCCACAGTCG
Band lengths:
214-1130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development