RnoEX0101105 @ rn6
Exon Skipping
Gene
ENSRNOG00000058932 | Zfp202
Description
zinc finger protein 202 [Source:RGD Symbol;Acc:1562294]
Coordinates
chr8:44063498-44065191:+
Coord C1 exon
chr8:44063498-44063586
Coord A exon
chr8:44064401-44064530
Coord C2 exon
chr8:44065072-44065191
Length
130 bp
Sequences
Splice sites
3' ss Seq
GGATCCTTGTGTCATTGCAGGGA
3' ss Score
6.44
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
Exon sequences
Seq C1 exon
AGGTTCCAGTGTCCCAGCATGCAGACCTTCCCACAGAACAAGGGTCTGGACACCCAGAGATGGTTGCTCTTCTCACTGCTCTCTCTCAG
Seq A exon
GGACTGGTCACATTCAAGGATGTGGCTCTGTGCTTCTCACAAGATCAATGGAGTGATCTGGATCCAACACAAAAAGAATTCTATGGAGAATATGTCTTGGAAGAAGATTGTGGAATTGTGGTCTCTCTGT
Seq C2 exon
CATTTCCAATTCCCAGACTAGATGATCCCTCCCAGATTAGAGAAGAAGAGCCTCAGGTCCCAGGAGTCCATGAATCTCAAGAACCTGCAGAACCAGAAATCCTGAGTTTTACCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058932_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.068 C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=93.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCAGTGTCCCAGCATG
R:
AGGTAAAACTCAGGATTTCTGGT
Band lengths:
202-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]