BtaEX6058851 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016684 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr15:34850315-34852108:-
Coord C1 exon
chr15:34852020-34852108
Coord A exon
chr15:34850974-34851103
Coord C2 exon
chr15:34850315-34850434
Length
130 bp
Sequences
Splice sites
3' ss Seq
GAATCCTTGTGTTGTTTCAGGGC
3' ss Score
8.52
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
Exon sequences
Seq C1 exon
AGGTTCCAGTGCTCCAGAACCCAGCCCTTCCTGAAGAGAGGAACTCTGGAAACTCCGAGATGGTCGCCCTTCTCACTGCTCTATCACAG
Seq A exon
GGCTTGGTCGCTTTCAAGGATGTGGCCGTATGCTTCTCCCAGGACCAGTGGAGCGATCTGGATCCAACCCAGAAAGAGTTCTATGGGGAATACGTCTTGGAAGACGACTGTGGAATCGTGGTCTCCCTGT
Seq C2 exon
CCTTTCCAATCCCCAGACTAGACGAGATCTCCCATGTCAGAGAAGAAGAGCCTCTGGTCCCAGACGTCCCAGAGCCTCAGGAGCCTGAAGAGCCAGAAATTCTGAGTTTTACCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016684-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=0.136 C2=0.805
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=93.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCCAGTGCTCCAGAACC
R:
AGGTAAAACTCAGAATTTCTGGCTCT
Band lengths:
203-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]