MmuEX0053084 @ mm9
Exon Skipping
Gene
ENSMUSG00000025602 | Zfp202
Description
zinc finger protein 202 [Source:MGI Symbol;Acc:MGI:1933401]
Coordinates
chr9:40016463-40018145:+
Coord C1 exon
chr9:40016463-40016551
Coord A exon
chr9:40017352-40017481
Coord C2 exon
chr9:40018026-40018145
Length
130 bp
Sequences
Splice sites
3' ss Seq
GGATCCTTGTGTCATTGCAGGGA
3' ss Score
6.44
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
Exon sequences
Seq C1 exon
AGGTTCCAGTGTCCCAGGATGTAGACCTTCCCACAGAACAAGGGTCTGGACACCCAGAGATGGTTGCTCTTCTCACTGCTCTCTCTCAG
Seq A exon
GGACTGGTCACATTCAAGGATGTGGCTCTGTGCTTCTCACAGGATCAGTGGAGTGATCTGGATCCAACACAAAAAGAATTCTATGGAGAGTATGTCTTGGAAGAAGACTGTGGAATTGTGGTCTCTCTGT
Seq C2 exon
CATTTCCAATTCCCAGACTAGATGATACCTCCCAGATTAGAGAAGAAGAGCCTCAGGTCCCAGGTGTCCATGAGTCTCAAGAGCCTGCAGAACCAGAAATCCTGAGTTTTACCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025602-'6-6,'6-5,7-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.092 C2=0.829
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=93.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCCAGTGTCCCAGGATG
R:
AGGTAAAACTCAGGATTTCTGGT
Band lengths:
203-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: