HsaEX6005344 @ hg19
Exon Skipping
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:12994]
Coordinates
chr11:123598184-123599922:-
Coord C1 exon
chr11:123599834-123599922
Coord A exon
chr11:123598841-123598970
Coord C2 exon
chr11:123598184-123598303
Length
130 bp
Sequences
Splice sites
3' ss Seq
AAATCCTTATGTGGTTTCAGGGA
3' ss Score
5.95
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
Exon sequences
Seq C1 exon
AGGTCCCAGTGCCCGAGGACCCAGACCTTCCTGCAGAGAGGAGCTCTGGAGACTCAGAGATGGTTGCTCTTCTTACTGCTCTGTCACAG
Seq A exon
GGACTGGTAACGTTCAAGGATGTGGCCGTATGCTTTTCCCAGGACCAGTGGAGTGATCTGGACCCAACACAGAAAGAGTTCTATGGAGAATATGTCTTGGAAGAAGACTGTGGAATTGTTGTCTCTCTGT
Seq C2 exon
CATTTCCAATCCCCAGACCTGATGAGATCTCCCAGGTTAGAGAGGAAGAGCCTTGGGTCCCAGATATCCAAGAGCCTCAGGAGACTCAAGAGCCAGAAATCCTGAGTTTTACCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261-'6-7,'6-6,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.182 C2=0.805
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=93.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAGTGCCCGAGGAC
R:
TGTAGGTAAAACTCAGGATTTCTGGC
Band lengths:
204-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)