RnoINT0167845 @ rn6
Intron Retention
Gene
ENSRNOG00000058932 | Zfp202
Description
zinc finger protein 202 [Source:RGD Symbol;Acc:1562294]
Coordinates
chr8:44064401-44065191:+
Coord C1 exon
chr8:44064401-44064530
Coord A exon
chr8:44064531-44065071
Coord C2 exon
chr8:44065072-44065191
Length
541 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
3' ss Seq
CTTTCCTGTCTCTTGAGCAGCAT
3' ss Score
6.82
Exon sequences
Seq C1 exon
GGACTGGTCACATTCAAGGATGTGGCTCTGTGCTTCTCACAAGATCAATGGAGTGATCTGGATCCAACACAAAAAGAATTCTATGGAGAATATGTCTTGGAAGAAGATTGTGGAATTGTGGTCTCTCTGT
Seq A exon
GTAAGGAGTTGCATGTATTTCCAGGGCATTCTAGCCACAAACATCTTTTCCGTGTTGGAATAGAGGGAATCAAAGACCTTGAACTACATGTACTAAGCTTTCGCTAATGCATGCCTACCCCACAATGAGATTAAAGATGAGTTAGCTGAAAAAGATGACCCCCTTCCAACAGAAAGGAAGAAAGAAAGGTGTTTGGAAGAAAGTGAATGGAAAATGAGAAAATACAGTTAGAGTTTTTTGAGTTTTATTTAACTTTTGAAGCAAGCATATGAGTTTTAAAGCAGTCAGAACAAAGATAATCGCTTTCTTCAACCTGAAGGGAAGGAGCAAGGAGCACAGTAAGTAGTCTAGTAACTGAGGCTCAGGTGAAAGCACTAGAAATGCTCAAGACTGGCAGCGCGGAAACACGCAGAGCTGAAGAGTAGTGATGTCTGAGCAGTTAACCCACGCCTTGGCTCTGCCATCTACGAGTCCAGACAGATGCTCTTAAGGAGGTATTGAAGCCAATCATGATGTCCTTTCTTTCCTGTCTCTTGAGCAG
Seq C2 exon
CATTTCCAATTCCCAGACTAGATGATCCCTCCCAGATTAGAGAAGAAGAGCCTCAGGTCCCAGGAGTCCATGAATCTCAAGAACCTGCAGAACCAGAAATCCTGAGTTTTACCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058932:ENSRNOT00000084416:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.780
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGGTCACATTCAAGGATGT
R:
ATAGGTAAAACTCAGGATTTCTGGT
Band lengths:
246-787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]