HsaINT0186420 @ hg19
Intron Retention
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:12994]
Coordinates
chr11:123598184-123598970:-
Coord C1 exon
chr11:123598841-123598970
Coord A exon
chr11:123598304-123598840
Coord C2 exon
chr11:123598184-123598303
Length
537 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
3' ss Seq
ATTTTCCCTCTCTTGAGCAGCAT
3' ss Score
5.98
Exon sequences
Seq C1 exon
GGACTGGTAACGTTCAAGGATGTGGCCGTATGCTTTTCCCAGGACCAGTGGAGTGATCTGGACCCAACACAGAAAGAGTTCTATGGAGAATATGTCTTGGAAGAAGACTGTGGAATTGTTGTCTCTCTGT
Seq A exon
GTAAGGAATTTCAAGTATTCTAGAGTGTTCTAAGCCCAGAGATCTTTTTCCTGCTGGAAATTTTGGGGGATCTTAGACCTTAGATTGTATGCAGTGAACTTCTCTTATGCCTTCCCCACCAATAAAATTGAGGGATTAGGTGAAAAATATGGTGTCCTTTCAAGTAAAAGATAAATGGATGGAAATGGAAACCTCTAATAGGAAAACAAACTTGTAATATGACAGCTTTAGTGCAGAAATATTTGAAGTAAGCACATGAGTTTTAAAACAGTAAGAGTTGGAGATAATCTTTCTTGAATATGGGAAAAGAGGATAAGGTGTACAATGGTATAATTATTAAGTTGCAGGTGAAAACCACAAGAAAGGCAAGAGATACGCAGTCCTTGGTTAAAAGTACACAAACTAAAGAGATGAAAGATTTCATCACCTGAGCTAGCTATGTATTTGCCCCACAACCTACCAAATAGAAAAGGACCGCTCTTAACACAGGGAATTGTTGAGCCAATCGTGATATCCTATTTTCCCTCTCTTGAGCAG
Seq C2 exon
CATTTCCAATCCCCAGACCTGATGAGATCTCCCAGGTTAGAGAGGAAGAGCCTTGGGTCCCAGATATCCAAGAGCCTCAGGAGACTCAAGAGCCAGAAATCCTGAGTTTTACCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261-ZNF202:NM_003455:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.805
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGGTAACGTTCAAGGATGT
R:
TGTAGGTAAAACTCAGGATTTCTGGC
Band lengths:
247-784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)