BtaINT0165024 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016684 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr15:34850315-34851103:-
Coord C1 exon
chr15:34850974-34851103
Coord A exon
chr15:34850435-34850973
Coord C2 exon
chr15:34850315-34850434
Length
539 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
3' ss Seq
TGTTTCCCTCTCTTGAGCAGCCT
3' ss Score
5.88
Exon sequences
Seq C1 exon
GGCTTGGTCGCTTTCAAGGATGTGGCCGTATGCTTCTCCCAGGACCAGTGGAGCGATCTGGATCCAACCCAGAAAGAGTTCTATGGGGAATACGTCTTGGAAGACGACTGTGGAATCGTGGTCTCCCTGT
Seq A exon
GTAAGGAATTTCAAGTGTTTCTAGAGTGTCCTGAGCACAAAGATCTTCCTCTTGTTGGAAACTGAGGGTGTCTTAGACTTTCGTTGCACATACTACACTTCTCTTACACTGACCCTACCGGTGACATGAAAGGACAGCTGAAGAAGATGATAGCTTTCAAAATTAAAGGGAAGAGAAAATGCCTAGAAAGTAGTTGGAAACTTGAACAAGAAAATAGAGCTATAATATTATAGTTTTAATGTGAGTTTTAGTTTAGTGCACATAGGTAAGCATATCAGTTTTGAAGCAAGCAATAAAAGTTTGGAGTATTCTACTTACTTGAATATAGGAAAAGAGGGTAACACTGCCAGTTTTGTGATTACTGAGTTACCGGTGAAAGGCAAGAGATACAGTTCCCATCGGGCTCAAGCCAAAGAGACGGAAGGTTTGAATGGCCTGCCTATGGGATTTTTCTTCAGTCTACCGAACAGAAAAGATCTGCTCTTGACACAGGGGACTGTTGAGCCAATCGTGATGTCCTGTTTCCCTCTCTTGAGCAG
Seq C2 exon
CCTTTCCAATCCCCAGACTAGACGAGATCTCCCATGTCAGAGAAGAAGAGCCTCTGGTCCCAGACGTCCCAGAGCCTCAGGAGCCTGAAGAGCCAGAAATTCTGAGTTTTACCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016684:ENSBTAT00000022184:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.805
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGGTCGCTTTCAAGGAT
R:
ATAGGTAAAACTCAGAATTTCTGGCT
Band lengths:
246-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development