MmuINT0178724 @ mm9
Intron Retention
Gene
ENSMUSG00000025602 | Zfp202
Description
zinc finger protein 202 [Source:MGI Symbol;Acc:MGI:1933401]
Coordinates
chr9:40017352-40018145:+
Coord C1 exon
chr9:40017352-40017481
Coord A exon
chr9:40017482-40018025
Coord C2 exon
chr9:40018026-40018145
Length
544 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
3' ss Seq
TTTTCCCGTCTCTTGAGCAGCAT
3' ss Score
5.81
Exon sequences
Seq C1 exon
GGACTGGTCACATTCAAGGATGTGGCTCTGTGCTTCTCACAGGATCAGTGGAGTGATCTGGATCCAACACAAAAAGAATTCTATGGAGAGTATGTCTTGGAAGAAGACTGTGGAATTGTGGTCTCTCTGT
Seq A exon
GTAAGGAGTTTTATGTATTTCCATGCCATTCTAGCCACAAACATCTTTTCCTGTTGGAATATAGGGAATCGGAGACCTTGAACTACATGTACTAAACTTTCACTAATGCATGCCTACCCCACAGTGAGATTAAAGATCAGTTAGCTGACAAAGATGACACCCTTCCAACAGAAAGGAAGAAAGAACGGTGCTTGAAAAAACAGTGAATAGAAAATGAGAAAATACAGTTATTGTTTTTGAGTTCAATATTTAACTTTTGAAGTAAGCATATGAGTTTTGAAGCAGTCAAAACAAAGATAATCGTCCTTCAACAAGAGGGGAAAGAGCAAGGAACACGGCAAGTAGTCTAGTTACTGAGGCTCGGGTGAAAGCACTAGAAATGCTCAAGATGGGCAGCACAGAGAAACGCCAAGATGAAGAGTAGTGATGTCCGACCAGTTAACAGAGGCCTTTGCTCTGCCGTCTACCCGTCCAGACAGATGCTCTTAAGTCAAAGAAGTGTTGAGCCAATCATGATGTACTCTTTTTCCCGTCTCTTGAGCAG
Seq C2 exon
CATTTCCAATTCCCAGACTAGATGATACCTCCCAGATTAGAGAAGAAGAGCCTCAGGTCCCAGGTGTCCATGAGTCTCAAGAGCCTGCAGAACCAGAAATCCTGAGTTTTACCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025602-Zfp202:NM_030713:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=NA C2=0.829
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGGTCACATTCAAGGATGT
R:
ATAGGTAAAACTCAGGATTTCTGGT
Band lengths:
246-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: