RnoALTD0000164-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000056177 | AABR07010085.2
Description
NA
Coordinates
chr2:122721344-122722036:-
Coord C1 exon
chr2:122721966-122722036
Coord A exon
NA
Coord C2 exon
chr2:122721344-122721437
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTACAA
5' ss Score
-1.85
3' ss Seq
TTTTAAAATGTGCATTATAGACT
3' ss Score
5.06
Exon sequences
Seq C1 exon
TTACAAGAAGCACTGGAGCAACGCAGACAGCCCTCCCAATGCGCTACGAAGATGCAGGACTGCGTACAAAA
Seq A exon
NA
Seq C2 exon
ACTTGGACTTGAAAATCACATGTTAAAAGCTACAGCAAGAAAGCAAGCAGAGAAAATTGAACAGTTAAAGAAAAATCTACTCAGTGAATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056177-8-13,9-13,10-13-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAGCACTGGAGCAACG
R:
TGCTTGCTTTCTTGCTGTAGCT
Band lengths:
118-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]