RnoINT0001348 @ rn6
Intron Retention
Gene
ENSRNOG00000056177 | AABR07010085.2
Description
NA
Coordinates
chr2:122721344-122722036:-
Coord C1 exon
chr2:122721966-122722036
Coord A exon
chr2:122721438-122721965
Coord C2 exon
chr2:122721344-122721437
Length
528 bp
Sequences
Splice sites
5' ss Seq
AAAGTACAA
5' ss Score
-1.85
3' ss Seq
TTTTAAAATGTGCATTATAGACT
3' ss Score
5.06
Exon sequences
Seq C1 exon
TTACAAGAAGCACTGGAGCAACGCAGACAGCCCTCCCAATGCGCTACGAAGATGCAGGACTGCGTACAAAA
Seq A exon
GTACAAGGCTGCGTGCAAAATGACTTGAGTACTTACAAAGCAAATACGTAGTGTGGTATGGGAATTATACCGGTCATGACAACTTATGAGATTTATTCTTGATTTACTTGAAACACACAATTTGGCCTGGGGGTACAGTTTGATAGTATAATAATTTTTGCAAATCTTACATGTTTGCTTAATTATTCATAAAATAAAGCTAGAAAATGATACATTTATTATTTTACTTTTTTTATAAAAGATTTATTCATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCGGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCACCGAGCCATCTCTCCAGCCCTATTATTTTACTTTTTATCAGAATTTATATATTATTTAAGATCTTTGTTGATAAATTGCATGATGTTTTAAAATTGGTGCGTGAGTGTAACTATTTTAAAATGTGCATTATAG
Seq C2 exon
ACTTGGACTTGAAAATCACATGTTAAAAGCTACAGCAAGAAAGCAAGCAGAGAAAATTGAACAGTTAAAGAAAAATCTACTCAGTGAATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056177:ENSRNOT00000080181:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]