MmuINT0030399 @ mm10
Intron Retention
Gene
ENSMUSG00000047696 | Ccdc144b
Description
coiled-coil domain containing 144B [Source:MGI Symbol;Acc:MGI:2681852]
Coordinates
chr3:36025348-36025970:-
Coord C1 exon
chr3:36025909-36025970
Coord A exon
chr3:36025442-36025908
Coord C2 exon
chr3:36025348-36025441
Length
467 bp
Sequences
Splice sites
5' ss Seq
AAAGTACAC
5' ss Score
-0.37
3' ss Seq
TTTTAAAATGTACATTATAGGCT
3' ss Score
5.24
Exon sequences
Seq C1 exon
TTACAGGAAGCACCGGACCAACACACCCAGTGCACGGAGAAGATGCGGGACTGCATACAAAA
Seq A exon
GTACACGGCTGCATGCAAATGACTTGAGTATTTACAAAGCAAATAAATAGTGTGGTATGAGAATTATACCAGTCATGACAGTTTATGAGACTTATTCTTAATTTACTTGAAATTACTTGGTATGAAGGGAAGGAGTTAGGGGAGGAAAGAGGGGAAGGGAACGGAGGAGGAAGGGTAGGGAGGGAGGGAAGGAAGGGAGGAAGGGAAAGAAGGAGGGAAGGACAGGGAGGGAAGGAAAGAAGGAAAGGAAGGAGCCACGATTTAGGCTTGGGGTACAGTTTAGTAGTATAATAATTTTTTGTAAATCTTATGTTTGCTTTATTATTCATAGTATAAAGCTGGAAATGATACATTTATTATTTTACTTTTTAAGAATTTAAATAATTATTTAAGATATGTGTTGACACATTATATGATGCTTTTTAAATTGGTGTGTGGAAGTAACTATTTTAAAATGTACATTATAG
Seq C2 exon
GCTTGGACTTGAAAATCACAAGTTAAAAGAGACAGCAAGAAAGCAAGCAGAGAAAATTGAACAGTTAAAGAAAAATCTACTAAGTGGAGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047696:ENSMUST00000200469:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types