RnoALTD0002781-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000049733 | Ankrd33
Description
ankyrin repeat domain 33 [Source:RGD Symbol;Acc:1586880]
Coordinates
chr7:142757297-142759322:+
Coord C1 exon
chr7:142757297-142757437
Coord A exon
NA
Coord C2 exon
chr7:142758655-142759322
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TCACACTGGGTCACTTGCAGGTG
3' ss Score
8.25
Exon sequences
Seq C1 exon
GTCATGTGCCTCTGGTGACTCTCCTGCTCAACTACTTTGCTGGCCTGGACCTGGAACGCAGGGACCAGCGGGGACTGACAGCTCTGATGAAGGCTGCCATTCGGGACCGCTCTGAGTGTGTGGTTGCACTCCTTATGGCAG
Seq A exon
NA
Seq C2 exon
GTGCTGACCTGAGCTCCGTGGATCCTGTCCGGGGCAAGACAGCCTTGGAATGGGCTGTTCTAACGGACAGCTTTGACACTGTACGGAAGATCCGGCAGCTGCTGAGGCGGCCCCAGGCAGAGCAGCTCAGCCTGCACTACCAGCCAGAGTGGCCAGCCTTGGCCCAACTTGTGGCCCAGGCCCAGGATCAGGCTGCCCCATCCCTCCTAGAGAGGCTGCAGGCTACTCTGAACCTCTCCTTTGCTCAGTTTCCTCAGGAAGGGGGTGTCCTGGACCACTTGGTGACTGTCACCACCAGTTTGGCCAGTCCCTTCCTGACCACTGCCTGCCACACACTGTGCCCTGACCACCCACCCACACTGGGCATTCGGGGCAAATCAGTGCCAGAGCTGTTGGGTACTGCCCCTCCACCTCCTCCAGCACCCCATCCTCCTCAGGAAGTCCCTGTTCCCCAGGCCTTTGCCCCCTACCAGAGCCCTCAGAGTATGCTCTCCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049733-3-8,4-8,5-8-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.327
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(29.6=43.8),PF127962=Ank_2=PU(44.7=70.8)
A:
NA
C2:
PF127962=Ank_2=PD(53.9=18.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTGCACTCCTTATGGCA
R:
AAGCTGTCCGTTAGAACAGCC
Band lengths:
95-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]